XEROXED:

R. Elber and M. Karplus, "Multiple conformational states of proteins:
a molecular dynamics analysis of myoglobin", Science 235, 318-321 (1987).


J. A. McCammon, B. R. Gelin, and M. Karplus, "Dynamics of folded proteins",
Nature 267, 585-590 (1977).




REFERENCES:

C. L. Brooks, III, M. Karplus, and B. M. Pettitt, "Proteins: a theoretical
perspective of dynamics, structure and thermodynamics", Adv. Chemical
Physics, v. 71, Interscience, John Wiley, 1988.
ISBN 0-471-52977-X (paper), QD453.A27, vol. 71.


J. A. McCammon and S. C. Harvey, "Dynamics of proteins and nucleic acids",
Cambridge, 1987.
ISBN 0-521-35652-0 (paper), QD431.M4245.


M. P. Allen and D. J. Tildesley, "Computer simulation of liquids",
Oxford, 1987.
ISBN 0-19-855645-4 (paper), QC145.2.A43.


W. F. van Gunsteren, and H. J. C. Berendsen, "Computer simulation of
molecular dynamics: methodology, applications, and perspectives in
chemistry", Angew. Chemie Int. Ed. Engl. 29, 992-1023 (1990).





WEB:

http://www.google.com/search?hl=en&ie=ISO-8859-1&oe=ISO-8859-1&q=tutorial+OR+lectures+OR+course+protein+molecular+dynamics+simulation
	google search:
	tutorial OR lectures OR course protein molecular dynamics simulation


http://www.biophysics.org/btol/
	Biophysics Textbook Online, various contributors

		http://www.biophysics.org/btol/compute.html
			Computational and Theoretical Biophysics, 
			Daniel A. Beard, Volume Editor
	especially

		info.nih.gov/intro_simulation/course_for_html.html
			Introduction to Macromolecular Simulation, 
			Peter J. Steinbach 

http://antas.agraria.uniss.it/
	tutorials and more

	http://antas.agraria.uniss.it/tutorials.html
		Computational Chemistry Tutorials

		http://www.fisica.uniud.it/~ercolessi/md/md/
			A molecular dynamics primer
			Furio Ercolessi

http://www.nyu.edu/classes/tuckerman/stat.mech/
	Statistical Mechanics, 
	Professor M. Tuckerman, mark.tuckerman@nyu.edu

http://monod.biomath.nyu.edu/index/course/textbooks.html
	list of references

http://www.lsmc.u-bordeaux.fr/pab/teachmat.html
	Modeling and Simulations: Course materials and references, 
	Philippe A. Bopp, pab@loriot.lsmc.u-bordeaux.fr

http://www.theochem.uni-stuttgart.de/theolinks/links.html
	long list of links

/www.ch.embnet.org/MD_tutorial
	intro to CHARMM
	short